#360: how to aggregate BMI, medications and the like for breast cancer analysis?
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Reporter: dconnolly | Owner: tmeyer
Type: design-issue | Status: assigned
Priority: major | Milestone: cohort-char-bc-db
Component: methods-core | Resolution:
Keywords: | Blocked By:
Blocking: 328, 382 |
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Changes (by dconnolly):
* cc: gpc-dev@… (added)
* owner: brad_mcdowell => tmeyer
* status: reopened => assigned
Comment:
The relevant RxCUIs are the direct children of the VA classes that
descend from either of these:
- [AN000] ANTINEOPLASTICS
- [HS000] HORMONES/SYNTHETICS/MODIFIERS
They're maintained in the form of REDCap pulldown choices in
[https://github.com/kumc-
bmi/bc_qa/blob/rc_codebook/bc2_collect/rx_choices.txt rx_choices.txt]. I
built this file when I discovered KUMC's drug ontology isn't complete; it
now has UNMC's drugs as well. You're welcome to propose edits in the
normal git/github ways or just email me suggested edits. Then I can paste
them into REDCap.
They're sorted by class code and then drug name. The first few lines are:
{{{
377179, [AN100] RXCUI:377179 Busulfan Injectable Solution
371165, [AN100] RXCUI:371165 Busulfan Oral Tablet
378774, [AN100] RXCUI:378774 Carmustine Drug Implant
}}}
The label pattern is `[{vc}] RXCUI:{cui} {drug}`.
from [https://github.com/kumc-
bmi/bc_qa/blob/rc_codebook/bc2_collect/bc2_dd.py#L282 bc2_dd.py#L282]
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/360#comment:10>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
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