Re: [graph-tool] Takes enormous memory and then eventually gets terminated.

2017-05-30 Thread isukritgupta
1. graph_tool version: 2.22 (commit 44bf2b92, Thu Mar 2 23:08:39 2017 +) 2. How do I put the graph over here? 3. Here: import numpy as np from graph_tool.all import * f_network = np.genfromtxt("Name of Edge List File", delimiter=',') f_network = f_network.astype(int) for edge in f_network:

Re: [graph-tool] lower memory output

2017-05-30 Thread Tiago de Paula Peixoto
On 28.05.2017 19:08, william_h277 wrote: > I am trying to create vectorized figures of some of the network layouts i've > done with graph-tools.draw() command. The network i'm trying to draw is > about 6000 nodes (i've attached an example layout below), and unfortunately > when i try and create a

Re: [graph-tool] Takes enormous memory and then eventually gets terminated.

2017-05-30 Thread Alexandre Hannud Abdo
Hi Isuki, No, that is not expected. We'll need more information to help you, can you provide at least: 1. graph-tool version you're using 3. the graph, exported by graph-tool 2. a minimal script that reproduces the issue Cheers, ale .~´ Le mardi 30 mai 2017 à 02:13 -0700, isukritgupta a écrit 

[graph-tool] Takes enormous memory and then eventually gets terminated.

2017-05-30 Thread isukritgupta
Hi, I have a graph with around 9500 nodes and 37000 edges. I want to determine the SBM corresponding to this network, but when I run minimize_blockmodel_dl function on it, I get a 'killed:9' error. I checked the memory consumption and it exceeded 50 GB at one point. Is this expected? Or is there