Re: [GRASS-user] cannot install extension on Windows 10

2019-04-15 Thread Martin Landa 
Hi,

po 15. 4. 2019 v 18:18 odesílatel Mira Kattwinkel
 napsal:
> For example g.extension extension=r.hydrodem operation=add
> Updating addons metadata file...
>
> ERROR: Unable to read addons metadata file from the remote server:
> [Errno socket error] [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify
> failed (_ssl.c:661)
>
> WARNING: NO addons metadate available. Addons metadate file not updated.

hm, metadata seems to be available [0]. I tested installing r.hydrodem
on my Windows 10 machine. No error, addons installed, possible to
launch. Something related to proxy or?

> Installation of  successfully finished (it is not!)

Are you sure about that? Binary package [1] is available. Have you
tried to launch the module?

Ma

[0] https://grass.osgeo.org/addons/grass7/modules.xml
[1] 
https://wingrass.fsv.cvut.cz/grass76/x86_64/addons/grass-7.6.0/r.hydrodem.zip

-- 
Martin Landa
http://geo.fsv.cvut.cz/gwiki/Landa
http://gismentors.cz/mentors/landa
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[GRASS-user] cannot install extension on Windows 10

2019-04-15 Thread Mira Kattwinkel 

Dear list,

I cannot install extensions in a new and clean GRASS 7.6.0 installation 
on Windows 10, because the list of extensions is empty.


g.extension-l

results in:

List of available extensions (modules):

Fetching list of modules from GRASS-Addons SVN (be patient)...

(Mon Apr 15 16:54:16 2019) Command finished (10 sec)


For example g.extension extension=r.hydrodem operation=add

results in:

Downloading precompiled GRASS Addons ...

Updating addons metadata file...

ERROR: Unable to read addons metadata file from the remote server: 
[Errno socket error] [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify 
failed (_ssl.c:661)


WARNING: NO addons metadate available. Addons metadate file not updated.

Installation of  successfully finished (it is not!)


Can anybody please help me out?

All the best, Mira

--
Dr. Mira Kattwinkel
Quantitative Landscape Ecology
Institute for Environmental Sciences
University of Koblenz-Landau
Fortstraße 7
76829 Landau
Germany
Phone: + 49 6341 280-31553
Office: Building I, Room 2.02

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Re: [GRASS-user] v.class.mlR Error in data.frame : arguments imply differing number of rows

2019-04-15 Thread Moritz Lennert 

Hi Jamille,

On 15/04/19 14:49, Jamille Haarloo wrote:> Dear Moritz and other Grass- 
users and developers,

>
> I tried dealing with the error myself by changing predicted <-
> data.frame(predict(models.cv , features)) into
> predicted <- data.frame(predict(models.cv , features,
> na.action = na.exclude)), based on discussions online implying some
> predictions might be invalid NaN values. I checked the script output to
> see if this change was implemented and it was, but I get the same error.
> Any suggestions what to try next?>
> --
> v.class.mlR -i --overwrite segments_map=nvSegW24IDM4DV4@LUP1
> training_map=TrainingApril2019@LUP1 train_class_column=class_code
> output_class_column=output_class output_prob_column=probability
> classifiers=svmLinear,rf,xgbTree folds=5 partitions=10 tunelength=10
> weighting_modes=bwwv,qbwwv weighting_metric=accuracy
> 
classification_results=C:\Users\haarlooj\Documents\CELOS\v.class.mlr_outputapril2019\results_all_classifiers 

> 
accuracy_file=C:\Users\haarlooj\Documents\CELOS\v.class.mlr_outputapril2019\accuracy_classifiers 

> 
model_details=C:\Users\haarlooj\Documents\CELOS\v.class.mlr_outputapril2019\details_classifier_module_runs 

> 
bw_plot_file=C:\Users\haarlooj\Documents\CELOS\v.class.mlr_outputapril2019\box-whicker_classifier_performance 

> 
r_script_file=C:\Users\haarlooj\Documents\CELOS\v.class.mlr_outputapril2019\R_script4 


> processes=3
Normally, there should be no NA in the features as there is a line:

features <- na.omit(features)

early in the R script. Can you see it in the R_script4 file ?


> Running R now. Following output is R output.
> During startup - Warning messages:
> 1: Setting LC_CTYPE=en_US.cp1252 failed
> 2: Setting LC_COLLATE=en_US.cp1252 failed
> 3: Setting LC_TIME=en_US.cp1252 failed
> 4: Setting LC_MONETARY=en_US.cp1252 failed
> Loading required package: caret
> Loading required package: lattice
> Loading required package: ggplot2
> Warning messages:
> 1: package 'caret' was built under R version 3.5.3
> 2: package 'ggplot2' was built under R version 3.5.3
> Loading required package: foreach
> Loading required package: iterators
> Loading required package: parallel
> Warning messages:
> 1: package 'doParallel' was built under R version 3.5.3
> 2: package 'foreach' was built under R version 3.5.3
> 3: package 'iterators' was built under R version 3.5.3
> During startup - Warning messages:
> 1: Setting LC_CTYPE=en_US.cp1252 failed
> 2: Setting LC_COLLATE=en_US.cp1252 failed
> 3: Setting LC_TIME=en_US.cp1252 failed
> 4: Setting LC_MONETARY=en_US.cp1252 failed
> During startup - Warning messages:
> 1: Setting LC_CTYPE=en_US.cp1252 failed
> 2: Setting LC_COLLATE=en_US.cp1252 failed
> 3: Setting LC_TIME=en_US.cp1252 failed
> 4: Setting LC_MONETARY=en_US.cp1252 failed
> During startup - Warning messages:
> 1: Setting LC_CTYPE=en_US.cp1252 failed
> 2: Setting LC_COLLATE=en_US.cp1252 failed
> 3: Setting LC_TIME=en_US.cp1252 failed
> 4: Setting LC_MONETARY=en_US.cp1252 failed
> Error in data.frame(id = rownames(features), predicted) :
>arguments imply differing number of rows: 17851, 17849
> Execution halted
IDs are taken from the features and for some reasons there are two 
features which do not have a prediction. It might help if you could find 
out why.


I cannot test right now, but you might want to check if you can replace

ids <- rownames(features)

with something like

ids <- rownames(predicted)

?

Moritz
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[GRASS-user] v.class.mlR Error in data.frame : arguments imply differing number of rows

2019-04-15 Thread Jamille Haarloo 
Dear Moritz and other Grass- users and developers,

I tried dealing with the error myself by changing predicted <-
data.frame(predict(models.cv, features)) into predicted <-
data.frame(predict(models.cv, features, na.action = na.exclude)), based on
discussions online implying some predictions might be invalid NaN values. I
checked the script output to see if this change was implemented and it was,
but I get the same error.
Any suggestions what to try next?

--
v.class.mlR -i --overwrite segments_map=nvSegW24IDM4DV4@LUP1
training_map=TrainingApril2019@LUP1 train_class_column=class_code
output_class_column=output_class output_prob_column=probability
classifiers=svmLinear,rf,xgbTree folds=5 partitions=10 tunelength=10
weighting_modes=bwwv,qbwwv weighting_metric=accuracy
classification_results=C:\Users\haarlooj\Documents\CELOS\v.class.mlr_outputapril2019\results_all_classifiers
accuracy_file=C:\Users\haarlooj\Documents\CELOS\v.class.mlr_outputapril2019\accuracy_classifiers
model_details=C:\Users\haarlooj\Documents\CELOS\v.class.mlr_outputapril2019\details_classifier_module_runs
bw_plot_file=C:\Users\haarlooj\Documents\CELOS\v.class.mlr_outputapril2019\box-whicker_classifier_performance
r_script_file=C:\Users\haarlooj\Documents\CELOS\v.class.mlr_outputapril2019\R_script4
processes=3
Running R now. Following output is R output.
During startup - Warning messages:
1: Setting LC_CTYPE=en_US.cp1252 failed
2: Setting LC_COLLATE=en_US.cp1252 failed
3: Setting LC_TIME=en_US.cp1252 failed
4: Setting LC_MONETARY=en_US.cp1252 failed
Loading required package: caret
Loading required package: lattice
Loading required package: ggplot2
Warning messages:
1: package 'caret' was built under R version 3.5.3
2: package 'ggplot2' was built under R version 3.5.3
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Warning messages:
1: package 'doParallel' was built under R version 3.5.3
2: package 'foreach' was built under R version 3.5.3
3: package 'iterators' was built under R version 3.5.3
During startup - Warning messages:
1: Setting LC_CTYPE=en_US.cp1252 failed
2: Setting LC_COLLATE=en_US.cp1252 failed
3: Setting LC_TIME=en_US.cp1252 failed
4: Setting LC_MONETARY=en_US.cp1252 failed
During startup - Warning messages:
1: Setting LC_CTYPE=en_US.cp1252 failed
2: Setting LC_COLLATE=en_US.cp1252 failed
3: Setting LC_TIME=en_US.cp1252 failed
4: Setting LC_MONETARY=en_US.cp1252 failed
During startup - Warning messages:
1: Setting LC_CTYPE=en_US.cp1252 failed
2: Setting LC_COLLATE=en_US.cp1252 failed
3: Setting LC_TIME=en_US.cp1252 failed
4: Setting LC_MONETARY=en_US.cp1252 failed
Error in data.frame(id = rownames(features), predicted) :
  arguments imply differing number of rows: 17851, 17849
Execution halted
ERROR: There was an error in the execution of the R script.
Please check the R output.
(Thu Apr 11 12:09:19 2019) Command finished (1176 min 9 sec)
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