[gmx-users] Error when using mdrun_mpi

2019-05-12 Thread Hanin Omar
Hello all,I  am using gromacs 2019, i installed openmpi and did the buil mdrun only option, however when i type the command  mpirun -np 6 -v mdrun_mpi -multidir replica-[012345] -s 1a1z-md.tpr -x 1a1z-md.xtc  -o 1a1z-md.trr -c 1a1z-md.pdb -replex 500i get the following errormpirun was unable

[gmx-users] (no subject)

2019-05-12 Thread Mahsa Rezaei
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Re: [gmx-users] help OpenCL build failure

2019-05-12 Thread Michael Williams
Hi, I’ve pasted below an email that I sent to this list a few months ago after receiving some help building GROMACS on my MacBook with AMD GPU. This was with a slightly earlier version of GROMACS but it may still be helpful. Mike ——— Hi again Szilárd, I just wanted to follow up on my last

Re: [gmx-users] help OpenCL build failure

2019-05-12 Thread Benson Muite
Hi, Have you tried to use the cmake curse interface: ccmake .. -DGMX_BUILD_OWN_FFTW=ON -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ -DGMX_GPU=ON -DGMX_USE_OPENCL=ON What version of OS X are you using? Manual indicates may need 10.10.4 or higher if using an AMD GPU

[gmx-users] help OpenCL build failure

2019-05-12 Thread Jacob Farag
Hi I have successfully installed Gromacs version 2018.6 (non-GPU version: with the following values: cmake .. -DGMX_BUILD_OWN_FFTW=ON -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ -DBUILD_SHARED_LIBS=OFF -DCMAKE_INSTALL_PREFIX='usr/local/gromacs/2018.6/' I am not able to generate makefile for