Re: [gmx-users] gromacs.org_gmx-users Digest, Vol 191, Issue 10

2020-03-07 Thread Eduardo Mayo
> > > > Hi!, > I mean the page http://www.gromacs.org/Downloads/User_contributions/Force_fields has a amber14sb.ff.tar.gz amber14sb_OL15.ff_corrected-Na-cation-params.tar.gz but at the top of the page it is a warning that say "These force fields are provided by volunteer contributors on an as-is

[gmx-users] 回复: Gromacs 2020 fails to run adh_cubic_vsites

2020-03-07 Thread Rolly Ng
Dear Prof. Van der Spoel, Thank you for the quick reply. I just found that it works with 8, 16, 32, 64 and 128 threads but not 176 threads. Best, Rolly Ng -邮件原件- 发件人: gromacs.org_gmx-users-boun...@maillist.sys.kth.se 代表 David van der Spoel 发送时间: 2020年3月8日星期日 上午12:47 收件人:

Re: [gmx-users] Gromacs 2020 fails to run adh_cubic_vsites

2020-03-07 Thread David van der Spoel
Den 2020-03-07 kl. 17:04, skrev Rolly Ng: Dear Gromacs developers, I am new to Gromacs and I have recently compiled Gromacs 2020. I tried to run the ADH benchmarks from ftp://ftp.gromacs.org/pub/benchmarks/ADH_bench_systems.tar.gz The adh_cubic and adh_dodec completed

[gmx-users] Gromacs 2020 fails to run adh_cubic_vsites

2020-03-07 Thread Rolly Ng
Dear Gromacs developers, I am new to Gromacs and I have recently compiled Gromacs 2020. I tried to run the ADH benchmarks from ftp://ftp.gromacs.org/pub/benchmarks/ADH_bench_systems.tar.gz The adh_cubic and adh_dodec completed successfully, but the adh_cubic_vsites and

[gmx-users] Gromacs 2020 fails to run adh_cubic_vsites

2020-03-07 Thread Rolly Ng
Dear Gromacs developers, I am new to Gromacs and I have recently compiled Gromacs 2020. I tried to run the ADH benchmarks from ftp://ftp.gromacs.org/pub/benchmarks/ADH_bench_systems.tar.gz The adh_cubic and adh_dodec completed successfully, but the adh_cubic_vsites and

[gmx-users] NVT.mdp running in 4.6 version but failed in VERSION 5.1.2

2020-03-07 Thread Rana Ali
Hi I was running water on graphene using PBC =xy by keeping the graphene fixed in y direction. It was running in gromacs version 4.6 but failed to run in 5.1.2. This is the error. Back Off! I just backed up mdout.mdp to ./#mdout.mdp.12# ERROR 1 [file nvt.mdp]: With Verlet lists only full pbc