[gmx-users] Questions about implementing REST in GROMACS 4.6.5

2015-01-05 Thread
Dear gromacs user: Recently, I am trying to implement Replica Exchange with Solute Tempering in GROMACS following the way proposed by tsuyoshi terakawa(On easy implementation of a variant of the replica exchange with solute tempering in GROMACS, J Comput Chem. 2011 May).I have searched in the

[gmx-users] How to scale epsilon parameters of Lennard-Jones term in .top file?

2014-12-07 Thread
Hi all, I am trying to run REST in GROMACS following the way proposed by tsuyoshi terakawa. In their method,they implemented REST by rescaling the force-field parameters without even changing the code. I have also searched in the mailing list and found that we can manipulate the scale parameter

[gmx-users] how to scale epsilon parameters of Lennard-Jones term in .top file

2014-12-05 Thread
Hi all, I am trying to run REST in GROMACS following the way proposed by tsuyoshi terakawa. In their method,they implemented REST by rescaling the force-field parameters without even changing the code. I have also searched in the mailing list and found that we can manipulate the scale parameter