Re: [gmx-users] Spec'ing for new machines (again!)

2020-04-17 Thread FAISAL NABI
Gromacs is totally compatible with nvidia based gpu. You need to install cuda drivers and you can build easily with cmake. For amd gpu you would be needing openCL alongwith the sdk for amd gpu. I would suggest you to use nvidia acceleration for better performance. On Sat, Apr 18, 2020, 4:42 AM

Re: [gmx-users] Regarding version of gromacs

2020-04-10 Thread FAISAL NABI
I have tried the same few days back but it didn't work. I have been using gromacs 2018.1 earlier and then switched to 5.1.4 and it didn't work. On Fri, Apr 10, 2020, 6:43 PM Ashma Khan wrote: > Dear all, > I have run my simulation on gromacs 5.1.4 for 200ns but now I want to > extend my

Re: [gmx-users] Lincs warning in free energy calculation

2020-03-27 Thread FAISAL NABI
eally appreciated. > > Thanks. > > Sadaf > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists &g

[gmx-users] (no subject)

2020-03-14 Thread FAISAL NABI
an error while i add ions that "Atomtype CAro not found", although i have added the atomtypes in the gromacs topology file still it's showing the same error. I request if somebody could provie me a stepwise protocol i could follow. Thank you -- Faisal Nabi *Pre-Doctoral Fellow (CSIR