Dear GMX experts,
How could I extract the only state from MD-simulation .TRR (or traj.xtc)
file that has the lowest RMSD from the reference protein.pdb file?
Please give me a line of code in UBUNTU or the script.
Thank you in advance,
Happy journey through the Universe,
Niyaz
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Gromacs Users
Dear Gromacs users,
I study an enzyme (hydrolase), which is known to undergo some
conformational changes upon substrate or inhibitor binding.
Protein Data Bank at rcsb.org has only suitable entries with complex
enzyme-inhibitor structures. I had got might be a stupid idea to make
minimisation