Re: [gmx-users] Gromacs Installation problem

2015-01-10 Thread Shankar Prasad Kanaujia
a good idea. Mark On Jan 9, 2015 2:27 PM, Shankar Prasad Kanaujia spkanau...@gmail.com wrote: Dear Users, I am getting a unique problem while installing gromacs. I am able to install any version of gromacs in the default path (i.e. /usr/local/gromacs). However, if I specify any

[gmx-users] Gromacs Installation problem

2015-01-09 Thread Shankar Prasad Kanaujia
available through Google search. I have tried with several versions of cmake both as root as well as user. I would really appreciate if any one can provide some hint to solve this problem. Regards, Shankar -- Shankar Prasad Kanaujia, Ph.D. Assistant Professor Department of Biotechnology Indian

[gmx-users] Atomtype ZN2+ not found

2014-12-19 Thread Shankar Prasad Kanaujia
Dear users, I had simulated one protein with metal Zn (Zinc) bound using Gromacs version 4.5.5 with OPLSS-AA force field. Now, I am trying to rerun to calculate the energy between two groups with Gromacs version 5.0.2. I am getting the following error: Atomtype ZN2+ not found. Can anybody help

Re: [gmx-users] Atomtype ZN2+ not found

2014-12-19 Thread Shankar Prasad Kanaujia
Dear Justin, Thanks for the details. As you mentioned, I did not find any force field which contains parameters for all metals. Regards, Shankar On Fri, Dec 19, 2014 at 5:47 PM, Justin Lemkul jalem...@vt.edu wrote: On 12/19/14 2:59 AM, Shankar Prasad Kanaujia wrote: Dear users, I had