Re: [gmx-users] g_membed failure

Hi again! Anyone with any suggestions? I am totally stuck with this... 2016-10-03 12:15 GMT+03:00 Sophia Kuriakidi <skyriak...@gmail.com>: > Hi Mark, > > Yes I started with the tutorial you mentioned. From which I understood I > need some kind of embed.dat file and that my .md

Re: [gmx-users] g_membed failure

, > > Did you start with > http://manual.gromacs.org/documentation/5.1/user-guide/ > mdrun-features.html#running-a-membrane-protein-embedding-simulation? > > > Mark > > On Sun, 2 Oct 2016 17:13 Sophia Kuriakidi <skyriak...@gmail.com> wrote: > > > Hi

Re: [gmx-users] g_membed failure

provide with an example embed.dat? Thanks a lot in advance! 2016-09-22 10:38 GMT+03:00 Sophia Kuriakidi <skyriak...@gmail.com>: > Thank you so much Tom, I will try that! > > 2016-09-21 21:11 GMT+03:00 Thomas Piggot <t.pig...@soton.ac.uk>: > >> g_membed is now pa

Re: [gmx-users] g_membed failure

t; //are used to provide the index and topology files used for the > embedding."/ > > Cheers > > Tom > > > On 21/09/16 18:36, Sophia Kuriakidi wrote: > >> Thank you for your responses! >> >> Sotirios:"Also the way this worked for me was to u

Re: [gmx-users] g_membed failure

just used the >> >> group and then selected the POPC. You must also include the group's name >> in the mdp in order for it to work. >> >> ____ >> From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se < >> gromacs

[gmx-users] g_membed failure

Hi all, I am trying to use g_membed in order to embed my protein in a lipid bilayer (I am using dppc). I am using the tutorial of Appendix A of this paper: *http://wwwuser.gwdg.de/~ggroenh/submitted/Membed_rev.pdf * I am creating an

[gmx-users] g_membed failure

Hi all, I am trying to use g_membed in order to embed my protein in a lipid bilayer (I am using dppc). I am using the tutorial of Appendix A of this paper: *http://wwwuser.gwdg.de/~ggroenh/submitted/Membed_rev.pdf * I am creating an