Re: [gmx-users] cannot open traj.xtc

advance. Regards Surbhi On Wed, Nov 18, 2015 at 6:11 PM, Justin Lemkul wrote: > > > On 11/18/15 2:45 AM, surbhi mahajan wrote: > >> Dear users, >> I am M.Sc student , I have been doing my simulations on lipids , I am >> stuck >> at the analysis part in which

[gmx-users] cannot open traj.xtc

help me in solving this error. Thanks in advance. Regards Surbhi Mahajan -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subs

Re: [gmx-users] remove water

Hi You can make another pdb file removing solvent molecules . Hope it helps. On 27-Oct-2015 7:43 am, "Sana Saeed" wrote: > hii want to remove water molecules from my pdb file using GROMACS. how can > i just have protein and no water molecules. my pdb file has both. thanks in > advance. > -- > Gro

[gmx-users] coarse graining

Please help me analyse these what do these coarse grain beads mean ​ Screenshot from 2015-10-01 11_42_24.png ​​ try to understand this.png

[gmx-users] error unknown bond_atomtype CH1

After grompp command i got this error Fatal error unknown bond_atomtype CH1 Please help me solve his error thanks in advance Surbhi -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http

[gmx-users] please help in analysis of picture attached

Hi, I am trying to do simulations using lipids like DPPC and DMPC , i am not able to develop a coarse grained model nor am i able to understand the purpose of the bead that i have got from SBCG model . Please help me in analyzing this attachment. I am very new to this field. please help Regards Su