Re: [gmx-users] which item is gpu wait for cpu?

2014-09-25 Thread xiexiao...@sjtu.edu.cn
the force ? xiexiao...@sjtu.edu.cn From: Szilárd Páll Date: 2014-09-24 17:45 To: Discussion list for GROMACS users CC: gromacs.org_gmx-users Subject: Re: [gmx-users] which item is gpu wait for cpu? On Wed, Sep 24, 2014 at 4:57 AM, xiexiao...@sjtu.edu.cn xiexiao...@sjtu.edu.cn wrote: I think

[gmx-users] non-bonded F kernel

2014-09-23 Thread xiexiao...@sjtu.edu.cn
anyone know why? I also find that the time consuming of Nonbonded F kernel is 77.657s but the time consuming of force is only 55.263s.Does the force item include non-bonded force?If it was true,why the Nonbonded F kernel takes more time than the force ? xiexiao...@sjtu.edu.cn -- Gromacs

[gmx-users] log file question

2014-09-23 Thread xiexiao...@sjtu.edu.cn
anyone know why? I also find that the time consuming of Nonbonded F kernel is 77.657s but the time consuming of force is only 55.263s.Does the force item include non-bonded force?If it was true,why the Nonbonded F kernel takes more time than the force ? xiexiao...@sjtu.edu.cn -- Gromacs

[gmx-users] which item is gpu wait for cpu?

2014-09-23 Thread xiexiao...@sjtu.edu.cn
I think that the items (wait GPU nonlocal) and (wait GPU local) in log file are the time consuming that cpu wait for gpu. And Does anyone know that which item is the time consuming that gpu wait for cpu in log file? xiexiao...@sjtu.edu.cn -- Gromacs Users mailing list * Please search

[gmx-users] profiler

2014-09-22 Thread xiexiao...@sjtu.edu.cn
Does anyone know that how to use NVIDIA Visual Profiler to profile gromacs-5.0? xiexiao...@sjtu.edu.cn -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support

[gmx-users] force

2014-09-19 Thread xiexiao...@sjtu.edu.cn
What does the force in log file mean?Does it include bonded force and non-bonded force? xiexiao...@sjtu.edu.cn -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org

[gmx-users] force

2014-09-19 Thread xiexiao...@sjtu.edu.cn
What does the force in log file mean?Does it include bonded force and non-bonded force? xiexiao...@sjtu.edu.cn -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org

Re: [gmx-users] force

2014-09-19 Thread xiexiao...@sjtu.edu.cn
Thanks.Do you know how to calculate the time consuming of non-bonded force that run on gpu? xiexiao...@sjtu.edu.cn From: Mark Abraham Date: 2014-09-19 18:37 To: Discussion list for GROMACS users Subject: Re: [gmx-users] force Hi, To which part of the log file do you refer? The Force part

[gmx-users] pme ranks

2014-08-22 Thread xiexiao...@sjtu.edu.cn
Does anyone know that what the pme ranks mean? xiexiao...@sjtu.edu.cn -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe