Re: [gmx-users] error in grompp command

2014-07-03 Thread RINU KHATTRI
: -- Message: 2 Date: Wed, 2 Jul 2014 12:26:07 +0530 From: RINU KHATTRI nickname.mi...@gmail.commailto: nickname.mi...@gmail.com To: gmx-us...@gromacs.orgmailto:gmx-us...@gromacs.org Subject: [gmx-users] error in grompp command Message-ID: caoefx3kbphak_brp4l4orcp_gsbsusohnlughx0wyjwewua

Re: [gmx-users] error in grompp command

2014-07-03 Thread RINU KHATTRI
wrote: -- Message: 2 Date: Wed, 2 Jul 2014 12:26:07 +0530 From: RINU KHATTRI nickname.mi...@gmail.commailto: nickname.mi...@gmail.com To: gmx-us...@gromacs.orgmailto:gmx-us...@gromacs.org Subject: [gmx-users] error in grompp command Message-ID

Re: [gmx-users] error in grompp command

2014-07-03 Thread Chandan Choudhury
] error in grompp command Message-ID: caoefx3kbphak_brp4l4orcp_gsbsusohnlughx0wyjwewua...@mail.gmail.com mailto:CAOEfx3KBphAK_BRP4L4orCp_gSBsuSOHNLUgHX0WyJweWuaN9A@ mail.gmail.com Content-Type: text/plain; charset=UTF-8 hello gromacs i an working on protein ligand complex

Re: [gmx-users] error in grompp command

2014-07-03 Thread Justin Lemkul
On 7/3/14, 6:27 AM, RINU KHATTRI wrote: hello gromacs users now have been removed this error after changing the number of SOL in topol_popc.top file (counted from popc128.gro) after that i hav used -maxwarn 1 command result is Generated 813 of the 2346 non-bonded parameter combinations

[gmx-users] error in grompp command

2014-07-02 Thread RINU KHATTRI
hello gromacs i an working on protein ligand complex with lipid membrane (popc) grompp -f minim.mdp -c popc128.gro -p topol_popc.top -o em.tpr -maxwarn -1 after this fatal error atomtypes CA not found and only md.oonly mdout is formed kindly help -- Gromacs Users mailing list * Please search

[gmx-users] error in grompp command

2014-07-02 Thread ERASTOVA V.
...@gromacs.org Subject: [gmx-users] error in grompp command Message-ID: caoefx3kbphak_brp4l4orcp_gsbsusohnlughx0wyjwewua...@mail.gmail.commailto:caoefx3kbphak_brp4l4orcp_gsbsusohnlughx0wyjwewua...@mail.gmail.com Content-Type: text/plain; charset=UTF-8 hello gromacs i an working on protein ligand complex

Re: [gmx-users] error in grompp command

2014-07-02 Thread Justin Lemkul
: nickname.mi...@gmail.com To: gmx-us...@gromacs.orgmailto:gmx-us...@gromacs.org Subject: [gmx-users] error in grompp command Message-ID: caoefx3kbphak_brp4l4orcp_gsbsusohnlughx0wyjwewua...@mail.gmail.com mailto:caoefx3kbphak_brp4l4orcp_gsbsusohnlughx0wyjwewua...@mail.gmail.com Content-Type: text