Re: [gmx-users] Atomtype OW not found

rasha.al...@manchester.ac.uk Sent: Wednesday, June 3, 2015 8:39 AM To: gromacs.org_gmx-users@maillist.sys.kth.se Subject: [gmx-users] Atomtype OW not found Dear Gromacs users, I am trying to run an md of carbohydrate systems in water, the pdb of carbohydrate produced in glycame builder, files

Re: [gmx-users] Atomtype OW not found

Hi, Does that script support such prehistoric versions of GROMACS? Mark On Wed, Jun 3, 2015 at 3:40 PM Rasha Alqus rasha.al...@manchester.ac.uk wrote: Dear Gromacs users, I am trying to run an md of carbohydrate systems in water, the pdb of carbohydrate produced in glycame builder, files

Re: [gmx-users] Atomtype OW not found

@maillist.sys.kth.se Subject: [gmx-users] Atomtype OW not found Dear Gromacs users, I am trying to run an md of carbohydrate systems in water, the pdb of carbohydrate produced in glycame builder, files were loaded in amber to produce topolgy file and coordinate using glycame force file. I have run

[gmx-users] Atomtype OW not found

Dear Gromacs users, I am trying to run an md of carbohydrate systems in water, the pdb of carbohydrate produced in glycame builder, files were loaded in amber to produce topolgy file and coordinate using glycame force file. I have run glycam2gmx.pl script to convert files into gromacs ones. I

[gmx-users] Atomtype OW not found - spc water model

Hello everyone, I'm trying to perform a MD of a mixture of solvent (in my case glycerol+water). In order to do that i first obtained the parameters of glycerol on CHARMM on here - par_all36_carb.prm. To use this parameters on gromacs i used the psf2topol.py script

Re: [gmx-users] Atomtype OW not found - spc water model

On 4/8/14, 11:18 AM, Carlos Navarrro Retamal wrote: Hello everyone, I'm trying to perform a MD of a mixture of solvent (in my case glycerol+water). In order to do that i first obtained the parameters of glycerol on CHARMM on here - par_all36_carb.prm. To use this parameters on gromacs i used