Re: [gmx-users] Calculation of configurational entropy

2017-04-02 Thread David van der Spoel
On 02/04/17 14:20, Saumyak Mukherjee wrote: Dear Users, I want to calculate the configurational entropy of certain water molecules in a protein water system. Can you kindly inform me how to do it? Basically it is not meaningful since first most water molecules are rigid in simulation, meaning t

[gmx-users] Calculation of configurational entropy

2017-04-02 Thread Saumyak Mukherjee
Dear Users, I want to calculate the configurational entropy of certain water molecules in a protein water system. Can you kindly inform me how to do it? >From different forums I have seen that it can be down by using g_covar and g_anaeig programs. But I don't clearly understand the use. From this