Re: [gmx-users] Constraints in the villin system

2015-06-01 Thread Mario Fernández Pendás
Thank you very much Justin. 2015-06-01 18:10 GMT+02:00 Justin Lemkul : > > > On 6/1/15 11:55 AM, Mario Fernández Pendás wrote: > >> Dear all, >> >> I am interested in simulations with the villin system using the constraint >> algorithm SHAKE. >> From the physical point of view, does it make any

Re: [gmx-users] Constraints in the villin system

2015-06-01 Thread Justin Lemkul
On 6/1/15 11:55 AM, Mario Fernández Pendás wrote: Dear all, I am interested in simulations with the villin system using the constraint algorithm SHAKE. From the physical point of view, does it make any sense to perform a simulation only with the hydrogen atoms constrained? Bonds involving

[gmx-users] Constraints in the villin system

2015-06-01 Thread Mario Fernández Pendás
Dear all, I am interested in simulations with the villin system using the constraint algorithm SHAKE. >From the physical point of view, does it make any sense to perform a simulation only with the hydrogen atoms constrained? Otherwise, when I try to constraint all the atoms using PBC and domain d