Re: [gmx-users] "Coul. Recip." in Logfile for Classical Ewald

2014-09-03 Thread Mark Abraham
Hi, In the group cut-off scheme, Coul Recip also contains exclusions for (e.g.) atoms in the central cell that share bonds, which are computed in gmxlib/ewald_util.c. You would need to compare with a run without bonds, or do some more printf. Mark On Wed, Sep 3, 2014 at 7:53 PM, Barnett, James

[gmx-users] "Coul. Recip." in Logfile for Classical Ewald

2014-09-03 Thread Barnett, James W.
I'm doing a classical Ewald simulation with GROMACS (obviously I should be using something other than Ewald in my simulations like PME, but I am just trying to understand the concept and write some analysis code.). In the logfile does "Coul. Recip." include the self correction (or any other kin