Re: [gmx-users] DSSP installation

--- > Date: Sat, 9 Dec 2017 11:29:41 +0100 > From: João Henriques <joao.m.a.henriq...@gmail.com> > Reply-To: gmx-us...@gromacs.org > Subject: Re: [gmx-users] DSSP installation > To: gmx-us...@gromacs.org > > The output is telling you what is wrong. Gro

Re: [gmx-users] DSSP installation

- Message from João Henriques <joao.m.a.henriq...@gmail.com> -     Date: Sat, 9 Dec 2017 11:29:41 +0100     From: João Henriques <joao.m.a.henriq...@gmail.com> Reply-To: gmx-us...@gromacs.org Subject: Re: [gmx-users] DSSP installation       To: gmx-us...@gromacs.org

Re: [gmx-users] DSSP installation

- Message from João Henriques <joao.m.a.henriq...@gmail.com> -     Date: Sat, 9 Dec 2017 11:29:41 +0100     From: João Henriques <joao.m.a.henriq...@gmail.com> Reply-To: gmx-us...@gromacs.org Subject: Re: [gmx-users] DSSP installation       To: gmx-us...@gromacs.org

Re: [gmx-users] DSSP installation

The output is telling you what is wrong. Gromacs doesn't support version 3. Install either version 1 or 2. In fact, I didn't even know there was a version 3 of DSSP, where did you get it? It certainly isn't on the official website (http://swift.cmbi.ru.nl/gv/dssp/). J On Fri, Dec 8, 2017 at

[gmx-users] DSSP installation

  Hii all I want to calculate the number of helical contain of protein. For that I tried using DSSP-3.0.0(gromacs version is 2016.3). I have downloaded the tar file and extracted it. Then place the dssp fiolder in /usr/local/bin and exported the path to ./bashrc file export

Re: [gmx-users] dssp installation using cygwin

Hi, Same as with UNIX. Download the windows binary and teach gmx do_dssp where it is. Mark On Mon, Jun 26, 2017 at 10:26 AM Neha Gupta wrote: > Hi gromacs users, > > I am using gromacs in windows through cygwin > > How to install dssp through cygwin? > > Can anyone

[gmx-users] dssp installation using cygwin

Hi gromacs users, I am using gromacs in windows through cygwin How to install dssp through cygwin? Can anyone help? Thanks, Neha -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read

Re: [gmx-users] dssp installation error

Hi, A: Did you set the DSSP environment variable to the dssp executable? B: Does your dssp version match that which is expected by do_dssp? Yours, Erik On 10 May 2014, at 19:39, elham tazikeh elham.tazi...@gmail.com wrote: dear gromacs users when i run do_dssp program 4.5 and 4.6 i saw

[gmx-users] dssp installation error

dear gromacs users when i run do_dssp program 4.5 and 4.6 i saw below error plz help me progran do_dssp, version 4.5.3 source code file:do_dsso.c, line: 521 fatal error: failed to execute command: /usr/local/bin/dssp -na dd5iLsk0 ddj8721A /dev/null2 /dev/null best regards elham tazikeh --