Re: [gmx-users] Dihedral drivers and 2D Energy Plot in gromacs

2017-03-21 Thread Justin Lemkul
e. -Justin On Fri, Mar 17, 2017 at 7:16 PM, mailto:gromacs.org_gmx-users-requ...@maillist.sys.kth.se>> wrote: Message: 4 Date: Fri, 17 Mar 2017 09:45:21 -0400 From: Justin Lemkul mailto:jalem...@vt.edu>> To: gmx-us...@gromacs.org <mailto:gmx-us...@gromacs.or

Re: [gmx-users] Dihedral drivers and 2D Energy Plot in gromacs

2017-03-21 Thread Devashish_Das
> > -Justin > > >> On Fri, Mar 17, 2017 at 7:16 >> PM, > <mailto:gromacs.org_gmx-users-requ...@maillist.sys.kth.se>> wrote: >> >> Message: 4 >> Date: Fri, 17 Mar 2017 09:45:21 -0400 >> From: Justin Lemkul mailto:jalem...@vt

Re: [gmx-users] Dihedral drivers and 2D Energy Plot in gromacs

2017-03-20 Thread Justin Lemkul
rom: Justin Lemkul mailto:jalem...@vt.edu>> To: gmx-us...@gromacs.org <mailto:gmx-us...@gromacs.org> Subject: Re: [gmx-users] Dihedral drivers and 2D Energy Plot in gromacs Message-ID: <85061dd9-acaa-0b50-9eaf-4efb5081d...@vt.edu <mailto:85061dd9-acaa-0b50-

Re: [gmx-users] Dihedral drivers and 2D Energy Plot in gromacs

2017-03-19 Thread Devashish_Das
m of the list) Am I doing this right? On Fri, Mar 17, 2017 at 7:16 PM, < gromacs.org_gmx-users-requ...@maillist.sys.kth.se> wrote: > Message: 4 > Date: Fri, 17 Mar 2017 09:45:21 -0400 > From: Justin Lemkul > To: gmx-us...@gromacs.org > Subject: Re: [gmx-users] Dihedral driver

Re: [gmx-users] Dihedral drivers and 2D Energy Plot in gromacs

2017-03-17 Thread Justin Lemkul
On 3/17/17 1:40 AM, Devashish_Das wrote: Hello All, Presently we are working in generating dihedral drivers for AIB dipeptide in gromacs. We would like to create energy contour maps for different phi, psi angle for AIB in gromacs. We are unable to create the correct energy map vs phi/psi angle

[gmx-users] Dihedral drivers and 2D Energy Plot in gromacs

2017-03-16 Thread Devashish_Das
Hello All, Presently we are working in generating dihedral drivers for AIB dipeptide in gromacs. We would like to create energy contour maps for different phi, psi angle for AIB in gromacs. We are unable to create the correct energy map vs phi/psi angle of AIB dipeptide during energy minimization