Re: [gmx-users] Error while running perl distances.pl

2017-09-06 Thread Vytautas Rakeviius
데부 고라크스나트<f07...@kist.re.kr> Cc.: gadhe.chang...@gmail.com Sent date: 2017-09-04 15:36:29 GMT +0900 (Asia/Seoul) Title: Re: [gmx-users] Error while running perl distances.pl     Script assumes that variable $distance is the second row separated by space in the file dist{number}.xvg which appe

Re: [gmx-users] Error while running perl distances.pl

2017-09-06 Thread 가디 장데부 고라크스나트
tas Rakeviius "<vytautas1...@yahoo.com> To: gmx-us...@gromacs.org,gromacs.org_gmx-users@maillist.sys.kth.se,가디 장데부 고라크스나트<f07...@kist.re.kr> Cc.: gadhe.chang...@gmail.com Sent date: 2017-09-04 15:36:29 GMT +0900 (Asia/Seoul) Title: Re: [gmx-users] Error while running perl distanc

Re: [gmx-users] Error while running perl distances.pl

2017-09-04 Thread Vytautas Rakeviius
Script assumes that variable $distance is the second row separated by space in the file dist{number}.xvg which appears after execution of system call gmx distance -s md_pull.tpr -f conf${i}.gro -n index.ndx -oall dist${i}.xvg -select \'com of group \"lig\" plus com of group \"protein\"\'I just

[gmx-users] Error while running perl distances.pl

2017-09-03 Thread 가디 장데부 고라크스나트
Hello Gmx user, I would like to transport solute molecule from the ion channel (intracellular to extracellular site) using steered MD and umbrella sampling method to calculate the energy. I followed Dr. Lemkul's tutorial and it works fine upto equilibration step but in distance.pl it shows

[gmx-users] Error while running perl distances.pl

2017-09-03 Thread 가디 장데부 고라크스나트
Hello Gmx user, I would like to transport solute molecule from the ion channel (intracellular to extracellular site) using steered MD and umbrella sampling method to calculate the energy. I followed Dr. Lemkul's tutorial and it works fine upto equilibration step but in distance.pl it shows