Re: [gmx-users] Errors during pull constrained NPT simulation for permeability calculations.

2017-06-16 Thread jay patil
_ > From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se > <gromacs.org_gmx-users-boun...@maillist.sys.kth.se> on behalf of jay patil > <jpatil...@gmail.com> > Sent: 15 June 2017 09:18:39 > To: gmx-us...@gromacs.org > Subject: [gmx-users] Errors during pull

Re: [gmx-users] Errors during pull constrained NPT simulation for permeability calculations.

2017-06-16 Thread Justin Lemkul
Please stop spamming the list by repeatedly posting the same question every few minutes. -Justin On 6/16/17 9:25 AM, jay patil wrote: Hi Experts, I am doing simulation for permeability calculation. In my simulation, water molecule is constrained (inside the Bilayer) at fixed distance from

[gmx-users] Errors during pull constrained NPT simulation for permeability calculations.

2017-06-16 Thread jay patil
Hi Experts, I am doing simulation for permeability calculation. In my simulation, water molecule is constrained (inside the Bilayer) at fixed distance from centre of the Bilayer. And another constrained in bulk water. I am doing equilibration with V-rescale(thermostat) and berendsen(for

[gmx-users] Errors during pull constrained NPT simulation for permeability calculations.

2017-06-16 Thread jay patil
Hi Experts, I am doing simulation for permeability calculation. In my simulation, water molecule is constrained (inside the Bilayer) at fixed distance from centre of the Bilayer. And another constrained in bulk water. I am doing equilibration with V-rescale(thermostat) and berendsen(for

[gmx-users] Errors during pull constrained NPT simulation for permeability calculations.

2017-06-16 Thread jay patil
Hi Experts, I am doing simulation for permeability calculation. In my simulation, water molecule is constrained (inside the Bilayer) at fixed distance from centre of the Bilayer. And another constrained in bulk water. I am doing equilibration with V-rescale(thermostat) and berendsen(for

[gmx-users] Errors during pull constrained NPT simulation for permeability calculations.

2017-06-16 Thread jay patil
Hi Experts, I am doing simulation for permeability calculation. In my simulation, water molecule is constrained (inside the Bilayer) at fixed distance from centre of the Bilayer. And another constrained in bulk water. I am doing equilibration with V-rescale(thermostat) and berendsen(for

Re: [gmx-users] Errors during pull constrained NPT simulation for permeability calculations.

2017-06-15 Thread Christopher Neale
. From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se <gromacs.org_gmx-users-boun...@maillist.sys.kth.se> on behalf of jay patil <jpatil...@gmail.com> Sent: 15 June 2017 09:18:39 To: gmx-us...@gromacs.org Subject: [gmx-users] Errors during pull constrained NP

[gmx-users] Errors during pull constrained NPT simulation for permeability calculations.

2017-06-15 Thread jay patil
Hi Experts, I am doing simulation for permeability calculation. In my simulation, water molecule is constrained (inside the Bilayer) at fixed distance from centre of the Bilayer. And another constrained in bulk water. I am doing equilibration with V-rescale(thermostat) and berendsen(for

[gmx-users] Errors during pull constrained NPT simulation for permeability calculations.

2017-06-15 Thread jay patil
Hi Experts, I am doing simulation for permeability calculation. In my simulation, water molecule is constrained (inside the Bilayer) at fixed distance from centre of the Bilayer. And another constrained in bulk water. I am doing equilibration with V-rescale(thermostat) and berendsen(for