[gmx-users] File input/output error

2015-09-28 Thread Sabyasachi Sahoo
Dear Gromacs-users, I am trying to run simulation of a protein on our CRAY XC40 supercomputer and while running simulation (using mdrun) for nvt npt simulations, and production runs, I am getting the following error: File input/output error: Cannot rename checkpoint file; maybe you are out of

Re: [gmx-users] File input/output error: algorithm_parameters.mdp

2015-04-01 Thread Justin Lemkul
On 4/1/15 4:12 PM, Poncho Arvayo Zatarain wrote: Hello, i´m working in a tutorial to generate a tpr file and i´m using grompp, my mdp file, .pdb and .top file, -o and .tpr file. I´m using this command for grompp: grompp -f dppc128.mdp -c dppc.pdb -p topol_dppc.top -o dppc128_1.tpr And it

[gmx-users] File input/output error: algorithm_parameters.mdp

2015-04-01 Thread Poncho Arvayo Zatarain
Hello, i´m working in a tutorial to generate a tpr file and i´m using grompp, my mdp file, .pdb and .top file, -o and .tpr file. I´m using this command for grompp: grompp -f dppc128.mdp -c dppc.pdb -p topol_dppc.top -o dppc128_1.tpr And it appears two errors: File input/output error: