Re: [gmx-users] How to convert charmm str to itp file?

2018-01-26 Thread Justin Lemkul
On 1/25/18 10:53 PM, 金 瑞涛 wrote: Greetings Miji That means you need to install netwokx. Try pip install networkx. if you still get other problem, it might caused by the lasted networkx, try the old version if other problem occurs, unless you are still missing other module. Just as a bit

Re: [gmx-users] How to convert charmm str to itp file?

2018-01-25 Thread 金 瑞涛
smartphone. Original message From: Мижээ Батсайхан <b.mijidd...@gmail.com> Date: 26/1/18 2:44 pm (GMT+10:00) To: gromacs.org_gmx-users@maillist.sys.kth.se Subject: [gmx-users] How to convert charmm str to itp file? Dear Experts, I generated LIG.str file using CGenFF for a sp

[gmx-users] How to convert charmm str to itp file?

2018-01-25 Thread Мижээ Батсайхан
Dear Experts, I generated LIG.str file using CGenFF for a specific molecule. I would like to use GROMACS package. I tried to convert LIG.str file to LIG.itp file. I tried as following command using cgenff_charmm2gmx.py: ./cgenff_charmm2gmx.py LIG LIG.mol2 LIG.str charmm36 I got following error: