Dear Justin, Mark and Frank,
Thank you so much for explaining it. Now I think I understand it.
I was confusing because I thought, I should install/compile the xorg-dev by
using "cmake". But actually, what you meant is, use "cmake" to compile Gromacs
after installing xorg-dev.
I tried as
Hello Cheng,
You can firstly install libX11-devel by yourself:
# sudo apt-get install libx11-dev (in CentOS: sudo yum install
libX11-devel)
Then "cd build" and run:
# cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON
-DGMX_X11=on
Thanks,
Frank
On 5/10/17, 2:33 PM, "Mark
On 5/10/17 4:27 PM, ZHANG Cheng wrote:
Dear Mark,
Yes, Justin gave me a link for Gromacs-2016.3, but not the link for xorg-dev.
Because you installed the necessary X11 components via apt-get.
Do you mean, I should uninstall my current Gromacs 5.0.4, then install the
Gromacs-2016.3, so
Dear Mark,
Yes, Justin gave me a link for Gromacs-2016.3, but not the link for xorg-dev.
Do you mean, I should uninstall my current Gromacs 5.0.4, then install the
Gromacs-2016.3, so that I can use the "gmx view" in the Gromacs-2016.3 on my
Ubuntu?
Cheng
-- Original
Hi,
Justin gave you a download link. Please try it.
Mark
On Wed, 10 May 2017 20:50 ZHANG Cheng <272699...@qq.com> wrote:
> Dear Justin,
> Thank you for your link. I know how to install the Gromacs based on your
> link. But do you know where I can download the tar.gz file so that I can
>
Dear Justin,
Thank you for your link. I know how to install the Gromacs based on your link.
But do you know where I can download the tar.gz file so that I can compile it
and then use "gmx view"?
Thank you.
Cheng
-- Original --
From: "ZHANG
On 5/10/17 11:27 AM, ZHANG Cheng wrote:
Dear Mark Abraham,
Thank you very much for your updating.
Sorry, could you please tell me where can I download the cmake file, or which
command line to use, in order to compiling & installing?
I have tried the below and they both worked, but "gmx
Dear Mark Abraham,
Thank you very much for your updating.
Sorry, could you please tell me where can I download the cmake file, or which
command line to use, in order to compiling & installing?
I have tried the below and they both worked, but "gmx view ??" still not work,
with the same
Hi,
Just like all normal installations of GROMACS, you need to run cmake from
your build directory and tell it where the source directory is. The ".."
works if the source is the parent directory, but if you're not following eg
the installation guide, then you'll have to adapt!
Mark
On Tue, 9
Dear Gromacs and Mark Abraham,
Sorry, I am not familiar with compiling issue.
I installed xorg-dev by:
sudo apt-get install xorg-dev
Then, I type
cmake .. -DGMX_X11=on
But I was told:
CMake Error: The source directory "/home/lanselibai/Cheng/gromacs/... ..." does
not appear to contain
Hi,
You'll need to install X11 headers and libraries (the package is called
xorg-dev, off the top of my head), and use cmake .. -DGMX_X11=on before
compiling & installing.
Mark
On Tue, May 9, 2017 at 8:59 PM ZHANG Cheng <272699...@qq.com> wrote:
> Dear Gromacs,
> I am running Gromacs 5.0.4 on
Dear Gromacs,
I am running Gromacs 5.0.4 on Ubuntu 14.04.1 LTS.
When I run "gmx view ..." as below:
gmx view -f dppc-md.xtc -s dppc-md.tpr
I got the following:
Compiled without X-Windows - can not run viewer.
Can I ask how to use "gmx view" on Ubuntu? Thank you.
Yours sincerely
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