Re: [gmx-users] Merging different topology files

2017-09-08 Thread Justin Lemkul
On 9/8/17 10:19 AM, Momin Ahmad wrote: Hi Justin, could you provide me a link to some tutorials that focus more on the program structure than on the results of simulations? I did some protein simulation tutorials that did not really help me in understanding the software itself. Big thanks

Re: [gmx-users] Merging different topology files

2017-09-08 Thread Momin Ahmad
Hi Justin, could you provide me a link to some tutorials that focus more on the program structure than on the results of simulations? I did some protein simulation tutorials that did not really help me in understanding the software itself. Big thanks in advance. Cheers, Momin Am 08.09.2017

Re: [gmx-users] Merging different topology files

2017-09-08 Thread Justin Lemkul
On 9/8/17 5:50 AM, Momin Ahmad wrote: Thank you for your help. I already did that but i get a weird error that i can not solve. I attached the topology files and the error message. Maybe the numbering of the residues has to be changed? Thanks in advance. You have lots of missing

Re: [gmx-users] Merging different topology files

2017-09-08 Thread Momin Ahmad
Thank you for your help. I already did that but i get a weird error that i can not solve. I attached the topology files and the error message. Maybe the numbering of the residues has to be changed? Thanks in advance. Cheers, Momin Am 07.09.2017 um 21:08 schrieb Justin Lemkul: On 9/7/17

Re: [gmx-users] Merging different topology files

2017-09-07 Thread Justin Lemkul
On 9/7/17 10:19 AM, Momin Ahmad wrote: Hello all, is there a simple way to merge two or more topology files into one? I am trying to use grompp to set up a simulation but my solvation contains different molecules which have different .top files. I also tried creating a main topology file

[gmx-users] Merging different topology files

2017-09-07 Thread Momin Ahmad
Hello all, is there a simple way to merge two or more topology files into one? I am trying to use grompp to set up a simulation but my solvation contains different molecules which have different .top files. I also tried creating a main topology file which includes the other two topologies