> > Hi,
> >
> > I am trying to solvate a small DNA molecule. Since I don't want so
> >
> > simulate more waters than what is really neccessary, I decided to try the
> > dodecahdron and octahedron unit cells.
> >
> > After I added waters I went to examine the resulting structures in VMD
> >
Hi Jernej,
This is simpler in two dimensions:
Consider a hexagonal unit cell.
Draw it, together with the surrounding copies (7 hexagons total).
Now connect the central hexagon with the right horizontal neighbor, and
with the 'northeast' neighbour.
Connect these two neighbors with their other
Hi,
I am trying to solvate a small DNA molecule. Since I don't want so
simulate more waters than what is really neccessary, I decided to try the
dodecahdron and octahedron unit cells.
After I added waters I went to examine the resulting structures in VMD
only to find that the octahedron and
