Re: [gmx-users] Output frames within a defined distance range

2015-08-06 Thread Nash, Anthony
Hi Justin, Cheers, that was perfect. In case anyone comes across this in months from now, I simply performed a gmx_d distance command which generates a .xvg of [timestamp] [distance]. This is then used as the input -drop for gmx_d trjconv. Combining with -dropunder [mindistance] and -dropover [ma

Re: [gmx-users] Output frames within a defined distance range

2015-08-06 Thread Justin Lemkul
On 8/6/15 3:56 AM, Nash, Anthony wrote: Hi all, I¹m hoping to avoid putting together a simple script. Is there an option in Gromacs 5+ to only output frames from a trajectory if a certain criteria is meet? In this case, I only want the frames from a trajectory if the carbon-alpha of a particul

Re: [gmx-users] Output frames within a defined distance range

2015-08-06 Thread Smith, Micholas D.
To: gmx-us...@gromacs.org Subject: [gmx-users] Output frames within a defined distance range Hi all, I¹m hoping to avoid putting together a simple script. Is there an option in Gromacs 5+ to only output frames from a trajectory if a certain criteria is meet? In this case, I only want the frames

[gmx-users] Output frames within a defined distance range

2015-08-06 Thread Nash, Anthony
Hi all, I¹m hoping to avoid putting together a simple script. Is there an option in Gromacs 5+ to only output frames from a trajectory if a certain criteria is meet? In this case, I only want the frames from a trajectory if the carbon-alpha of a particular GLY residue is within 0.8 - 1 nm of a zin