Re: [gmx-users] Output from gmx h2order

2019-11-04 Thread Decai Yu
Christian Thank you very much. That is very helpful. Decai On Mon, Nov 4, 2019 at 10:57 AM Christian Blau wrote: > Hello Decai, > > > h2order works in the following way: > >- all water molecules are put into the simulation box by applying > periodic boundary conditions so that the first >

Re: [gmx-users] Output from gmx h2order

2019-11-04 Thread Christian Blau
Hello Decai, h2order works in the following way:   - all water molecules are put into the simulation box by applying periodic boundary conditions so that the first water molecule atom is in the simulation box   - the simulation system is sliced along z (0,0,1) direction (default, can be

[gmx-users] Output from gmx h2order

2019-11-01 Thread Decai Yu
Hi, All There are four columns from the output of gmx h2order, mux, muy, myz, cosine with normal. What are they? Can anyone further explain? Decai Yu -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't