Re: [gmx-users] PBC issues with membrane-peptide simulation

2016-11-15 Thread Abhi Acharya
;> > > >> > > it is not an issue !! To resolve your problem you could simulate two >> > > bilayer in box and insert the peptides between them. >> > > >> > > HTH >> > > >> > > -- &

Re: [gmx-users] PBC issues with membrane-peptide simulation

2016-11-09 Thread Abhi Acharya
TH > > > > > > -------------- > > > > > > Message: 6 > > > Date: Wed, 9 Nov 2016 16:07:26 +0530 > > > From: Abhi Acharya <abhi117acha...@gmail.com> > > > To: gromacs.org_gmx-users@maillist.sys.kth.se > > >

Re: [gmx-users] PBC issues with membrane-peptide simulation

2016-11-09 Thread Mark Abraham
u could simulate two > > bilayer in box and insert the peptides between them. > > > > HTH > > > > -- > > > > Message: 6 > > Date: Wed, 9 Nov 2016 16:07:26 +0530 > > From: Abhi Acharya <abhi117acha...@gmail

Re: [gmx-users] PBC issues with membrane-peptide simulation

2016-11-09 Thread Abhi Acharya
gmx-users@maillist.sys.kth.se > Subject: [gmx-users] Fwd: PBC issues with membrane-peptide simulation > Message-ID: > <CAB1aw3zkCH7wmR6Za9H4OHm1PLG95cAeO0HJksxyxZi8yXC9Cg@mail. > gmail.com> > Content-Type: text/plain; charset=UTF-8 > > Dear Gromacs users, > &g

[gmx-users] PBC issues with membrane-peptide simulation

2016-11-09 Thread ABEL Stephane 175950
-users@maillist.sys.kth.se Subject: [gmx-users] Fwd: PBC issues with membrane-peptide simulation Message-ID: <cab1aw3zkch7wmr6za9h4ohm1plg95caeo0hjksxyxzi8yxc...@mail.gmail.com> Content-Type: text/plain; charset=UTF-8 Dear Gromacs users, I am trying to simulate a system consisting of a l