Re: [gmx-users] PMF - US histograms problem

2017-03-27 Thread Sajeewa Pemasinghe
Hi, When I get a region sparsely populated like that, I increase the number of points in that particular region and increase the k value to about 3000 but not more than that. Increasing the k value to something like 2 will result in the distribution getting very narrow and therefore further

[gmx-users] PMF - US histograms problem

2017-03-27 Thread Eudes Fileti
Hi everyone, I'm trying to calculate the PMF for the extraction of a peptide from within a peptide nanostructure. However I'm having difficulty to overlap the histograms for the first pulling windows: Many full overlap windows follow by a large gap with no histogram. I've tried the two things I