Re: [gmx-users] Problem with radius of gyration calculation

2014-02-06 Thread Justin Lemkul
On 2/6/14, 3:26 AM, Jernej Zidar wrote: Hi, I have a polymer system composed of three molecules (I generated it by taking one molecule and 'copied' along the y axis). Now, I'trying to compute the radius of gyration of one of these molecules. When I do the analysis for the smallest system,

Re: [gmx-users] Problem with radius of gyration calculation

2014-02-06 Thread João Henriques
First of all, Justin is right. Without commands and exact selections we can't help much. Second: Why don't try using VMD for calculating RG? - I ask the opposite, ie. why use VMD when you got a native tools to do such? It's like using genuine Nespresso capsules on a white-label machine when you

Re: [gmx-users] Problem with radius of gyration calculation

2014-02-06 Thread Ali Alizadeh
, Why don't try using VMD for calculating RG? Jernej wrote: Subject: [gmx-users] Problem with radius of gyration calculation Message-ID: CAANrtrJLdyrA1adXN2_Jc8th= npxrwme-pyabu9ue4w0ean...@mail.gmail.com Content-Type: text/plain; charset=UTF-8 Hi, I have