Re: [gmx-users] REMD Plots

2019-01-12 Thread Shan Jayasinghe
Hi Joel, Thank you very much. On Wed, Jan 9, 2019 at 3:27 PM Joel Awuah wrote: > Hi Shan, > I am not quite sure if you want to generate an REMD simulation mobility in > temperature space for the 30 replicas. If that be the case, then you can > use the data in the replica_temperature.xvg file

Re: [gmx-users] REMD Plots

2019-01-08 Thread Joel Awuah
Hi Shan, I am not quite sure if you want to generate an REMD simulation mobility in temperature space for the 30 replicas. If that be the case, then you can use the data in the replica_temperature.xvg file to plot replica index vs REMD steps. The 1st column in the file corresponds to the REMD

[gmx-users] REMD Plots

2019-01-08 Thread Shan Jayasinghe
Dear Gromacs users, How do we plot a graph for temperature vs swap step number using a REMD simulation with 30 systems. I already generated the replica_temp.xvg and replica_index.xvg files using demux.pl script. Thank you. Best Regards Shan Jayasinghe -- Gromacs Users mailing list * Please