Re: [gmx-users] RMSD between two groups

Hi, How about using g_dist and using an index file?! Cheers Mohsen On Mon, Mar 23, 2015 at 6:50 PM, leila salimi leilasal...@gmail.com wrote: Dear all, I have a question regarding to analyse the trajectory that I have. I am studying the interaction of peptide at interfaces, e.g Oxygen of

[gmx-users] RMSD between two groups

Dear all, I have a question regarding to analyse the trajectory that I have. I am studying the interaction of peptide at interfaces, e.g Oxygen of carboxylate group of side chains with Cations at the interface! I would like to calculate the distance between Oxygen of carboxylate group of side