Re: [gmx-users] RMSD plot of the backbone atoms

On 3/3/16 7:01 AM, Mahboobeh Eslami wrote: hi GMX usersi have done MD simulation for a protein-protein complex. i want to get RMSD plot of the backbone atoms for one of the protein chain. how do i prepare index file?thanks for your help Use make_ndx. Type "help" at the prompt if you

[gmx-users] RMSD plot of the backbone atoms

hi GMX usersi have done MD simulation for a  protein-protein complex.  i want to get RMSD plot of the backbone atoms for one of the  protein chain. how do i prepare index file?thanks for your help -- Gromacs Users mailing list * Please search the archive at