Dear users,
I have a question regarding the calculation of RMSD value for a big system
comprising of many replicas of the same peptide.
I know that with RMSD fit you can choose to “superimpose” your reference
structure to the one from the trajectory (rot+trans). My question is when
supplying
Hi, I have a .xtc file with 1000 frames and I want to use g_cluster to generate
the rmsd value between each two frames in the xtc file. However, I cannot find
the exact rmsd values in the .xpm file generated by g_cluster.
PS, I use gromacs 4.6.5
Hui
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