Re: [gmx-users] Regarding pdb2gmx and mdrun

2017-07-18 Thread Justin Lemkul
On 7/18/17 8:15 AM, S M Bargeen Turzo wrote: Hey I have been trying to convert S100A8A9(has two chains) to .gro but after energy minimization I am not getting an integer for the total charge of the system. What is the magnitude of this non-integer charge? Did you do anything funny during

[gmx-users] Regarding pdb2gmx and mdrun

2017-07-18 Thread S M Bargeen Turzo
Hey I have been trying to convert S100A8A9(has two chains) to .gro but after energy minimization I am not getting an integer for the total charge of the system. Secondly when I try to do molecular dynamics simulation using these parameters: ; 0.5 ps NVT production with Langevin thermostat and