Re: [gmx-users] Renumber atom ids and charge group in topology (.itp)

2014-12-16 Thread Nash, Anthony
..@maillist.sys.kth.se] on behalf of Justin > Lemkul [jalem...@vt.edu] > Sent: 16 December 2014 15:00 > To: gmx-us...@gromacs.org > Subject: Re: [gmx-users] Renumber atom ids and charge group in topology (.itp) > > On 12/16/14 9:54 AM, Nash, Anthony wrote: >> Dear gromacs use

Re: [gmx-users] Renumber atom ids and charge group in topology (.itp)

2014-12-16 Thread Justin Lemkul
org Subject: Re: [gmx-users] Renumber atom ids and charge group in topology (.itp) On 12/16/14 9:54 AM, Nash, Anthony wrote: Dear gromacs users, Renumbering the atom ids in a .gro file is very straight forwards, however, after cutting out the first 1/2 of my protein I am having great difficul

Re: [gmx-users] Renumber atom ids and charge group in topology (.itp)

2014-12-16 Thread Nash, Anthony
ege London From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se [gromacs.org_gmx-users-boun...@maillist.sys.kth.se] on behalf of Justin Lemkul [jalem...@vt.edu] Sent: 16 December 2014 15:00 To: gmx-us...@gromacs.org Subject: Re: [gmx-users] Renumber at

Re: [gmx-users] Renumber atom ids and charge group in topology (.itp)

2014-12-16 Thread Justin Lemkul
On 12/16/14 9:54 AM, Nash, Anthony wrote: Dear gromacs users, Renumbering the atom ids in a .gro file is very straight forwards, however, after cutting out the first 1/2 of my protein I am having great difficulty aligning my .itp file upon running grompp. Till this stage, it has been far ea

[gmx-users] Renumber atom ids and charge group in topology (.itp)

2014-12-16 Thread Nash, Anthony
Dear gromacs users, Renumbering the atom ids in a .gro file is very straight forwards, however, after cutting out the first 1/2 of my protein I am having great difficulty aligning my .itp file upon running grompp. Till this stage, it has been far easier for me to remove one particular domain of