Re: [gmx-users] Rotation of single moleculae in vacuum

2016-04-02 Thread Erik Marklund
Dear Vitaly, Isn’t this a case of a tumbling ice cube (https://en.wikipedia.org/wiki/Flying_ice_cube)? The solution is usually to change the comm-removal to include angular motions. Kind regards, Erik On 31 Mar 2016, at 22:22, VITALY V. CHABAN mailto:vvcha...@gmail.com>> wrote: I simulate a

[gmx-users] Rotation of single moleculae in vacuum

2016-03-31 Thread VITALY V. CHABAN
I simulate a single flexible molecule with no PBC starting from its optimized configuration (L_BFGS) and immediately turning T-coupling on. >From the very beginning, the molecule starts to rotate around COM. Although this motion may not matter for an isolated molecule, I'd be happy to understand a