Re: [gmx-users] Running Replica Exchange with Solute Tempering (REST2) with CHARMM36M

2019-01-11 Thread Thomas Piggot
You can use plumed, as long as you are scaling all of your protein (as you would be with REST2). You just need to post-process the output of the plumed partial_tempering script: https://groups.google.com/d/msg/plumed-users/lo-Sb8aUepY/X54UEB-tAgAJ

[gmx-users] Running Replica Exchange with Solute Tempering (REST2) with CHARMM36M

2019-01-10 Thread Aram Davtyan
Hello dear users, I am trying to figure out how to run Replica Exchange with Solute Tempering (REST2) simulation using CHARMM 36m force filed. The only method that I found so far involves using Plumed (which would have worked for me). However, the instructions I found (

[gmx-users] Running Replica Exchange with Solute Tempering (REST2) with CHARMM36M

2019-01-08 Thread Aram Davtyan
Hello, I am trying to figure out how to run Replica Exchange with Solute Tempering (REST2) simulation using CHARMM 36m force filed. The only method that I found so far involves using Plumed (which would have worked for me). However, the instructions I found (