[gmx-users] Umbrella Sampling with Direction-Periodic

2017-08-01 Thread Daniel Kozuch
Hello, I am using a pull code with geometry=direction-periodic and attempting to use gmx wham to construct the free energy. The pulling code is doing what I would like it to, but as might be expected from direction-periodic, when the pull distance is more than half the box length the distance is

[gmx-users] Umbrella Sampling with Direction-Periodic Pulling

2017-07-22 Thread Daniel Kozuch
Hello, I am using a pull code with geometry=direction-periodic and attempting to use gmx wham to construct the free energy. I believe the pulling code is doing what I would like it to, but as might be expected from direction-periodic, when the pull distance is more than half the box length the