On 2/21/18 1:04 PM, ZHANG Cheng wrote:
Dear Justin,
Thank you. But it does not make sense to me. Do you know if separator line is
always all the ~ ? If the separator line is following the 214th residue, the
215th residue should be the separator line, but why the 215th residue contains
the
Dear Justin,
Thank you. But it does not make sense to me. Do you know if separator line is
always all the ~ ? If the separator line is following the 214th residue, the
215th residue should be the separator line, but why the 215th residue contains
the secondary structure?
You can find my files
On 2/21/18 12:34 PM, ZHANG Cheng wrote:
Dear Qinghua,
Yes, exactly! But the numbering is:
1-214: first chain
215-442: second chain
However, for the secondary structure codes:
214th:
Dear Qinghua,
Yes, exactly! But the numbering is:
1-214: first chain
215-442: second chain
However, for the secondary structure codes:
214th:
Hello,
Maybe you have two chains in your system, then there should be one for
chain separator.
Best,
Qinghua
On 02/21/2018 06:20 PM, ZHANG Cheng wrote:
Dear Gromacs,
My protein only has 442 residues. After running
gmx do_dssp -f md_0_1_noPBC.xtc -s md_0_1.tpr -ssdump ssdump.dat -map
Dear Gromacs,
My protein only has 442 residues. After running
gmx do_dssp -f md_0_1_noPBC.xtc -s md_0_1.tpr -ssdump ssdump.dat -map ss.map -o
ss.xpm -sc scount.xvg -a area.xpm -ta totarea.xvg -aa averarea.xvg -tu ns
In the ss.xpm file, I got 443 numberings, i.e. y-axis is numbered from 1 to
