Re: [gmx-users] duplicated position restraint statements

2018-12-20 Thread Alex
That is way too much effort for not simply fixing the bug in the restraint generator, I hoped someone would just know off the top of their head ;) On Thu, Dec 20, 2018, 12:20 PM Justin Lemkul On Thu, Dec 20, 2018 at 2:08 PM Alex wrote: > > > Anyone? :) > > > > > Calculate a single-point energy

Re: [gmx-users] duplicated position restraint statements

2018-12-20 Thread Justin Lemkul
On Thu, Dec 20, 2018 at 2:08 PM Alex wrote: > Anyone? :) > > Calculate a single-point energy on a given configuration with and without duplicates. If the energy differs, you have your answer. -Justin > > On 12/16/2018 2:54 AM, Alex wrote: > > Hi all, > > > > Quick question: in some of our

Re: [gmx-users] duplicated position restraint statements

2018-12-20 Thread Alex
Anyone? :) On 12/16/2018 2:54 AM, Alex wrote: Hi all, Quick question: in some of our models, the list of position restraints as part of the permanent topology is created externally, based on the atomic positions. Unfortunately, there is a slight bug in the restraint generator and for a

[gmx-users] duplicated position restraint statements

2018-12-16 Thread Alex
Hi all, Quick question: in some of our models, the list of position restraints as part of the permanent topology is created externally, based on the atomic positions. Unfortunately, there is a slight bug in the restraint generator and for a small portion of the restrained atoms the statements