Re: [gmx-users] gromacs.org_gmx-users Digest, Vol 169, Issue 67

2018-05-19 Thread Mark Abraham
Hi, Please don't subscribe to a digest if you actually want to discuss. Nobody will follow your replies. You already need to know what oplsaa wants for its cutoffs, so you'd best find that out from its literature before starting your work. Mark On Sat, May 19, 2018, 06:49 SHYANTANI MAITI

Re: [gmx-users] gromacs.org_gmx-users Digest, Vol 169, Issue 67

2018-05-18 Thread SHYANTANI MAITI
On 5/18/18 12:39 PM, SHYANTANI MAITI wrote: > Dear all, > What should be the value of d in editconf command for a protein-protein > complex of 500residues and length of protein is 6.5nm maximum. > I have simulated it using the command: > editconf -f conf.gro -bt cubic -d 6 -o box.gro >