Re: [gmx-users] how to compute charged carried by a single residue

2016-12-20 Thread Amir Zeb
alright Mark, Thanks a lot On Tue, Dec 20, 2016 at 3:00 AM, Mark Abraham wrote: > Hi, > > On Tue, Dec 20, 2016 at 9:20 PM Amir Zeb wrote: > > > Thanks Mark for your quick response, > > > > I did as you mentioned, what i got was actually the total charge of the > > each residue remained consta

Re: [gmx-users] how to compute charged carried by a single residue

2016-12-20 Thread Mark Abraham
Hi, On Tue, Dec 20, 2016 at 9:20 PM Amir Zeb wrote: > Thanks Mark for your quick response, > > I did as you mentioned, what i got was actually the total charge of the > each residue remained constant at the end. > Your topology isn't changing over the simulation, so you shouldn't expect it to c

Re: [gmx-users] how to compute charged carried by a single residue

2016-12-20 Thread Amir Zeb
Thanks Mark for your quick response, I did as you mentioned, what i got was actually the total charge of the each residue remained constant at the end. What i'm interested in, is that i have to analyze my results and it seems that there is loss of electrostatic interaction for a mutated residue bu

Re: [gmx-users] how to compute charged carried by a single residue

2016-12-20 Thread Mark Abraham
Hi, You open your topology file in a text editor and see what it is :-) Mark On Tue, Dec 20, 2016 at 9:12 PM Amir Zeb wrote: > Hello All, > > I want to know the total charge carried by a specific residue during or > after simulation. Please let me know how may I do it? I don't know the > exact

[gmx-users] how to compute charged carried by a single residue

2016-12-20 Thread Amir Zeb
Hello All, I want to know the total charge carried by a specific residue during or after simulation. Please let me know how may I do it? I don't know the exact command line Thanks -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-User