i am doing this simulation with martini coarse grained force field. so i
just replace p and n by bead name and it is working now.
thank you so much again for your reply.
On Wed, Oct 30, 2019 at 1:04 PM SHAHEE ISLAM wrote:
> i am so sorry for the late reply. I have applied both of your
i am so sorry for the late reply. I have applied both of your suggestion
but still it does not working.
syntax error
invalid selection 'POPG and name P* N* within 1.0 of Protein'
can you please guide me to solve the error.
On Fri, Oct 25, 2019 at 3:39 PM Justin Lemkul wrote:
>
>
> On 10/25/19
On 10/25/19 5:38 AM, Peter Stern wrote:
You are probably causing your command to run in the background with “&”. Try
using “and” instead.
In addition to this, the selection string needs to be enclosed by single
quotes.
-Justin
Peter
Sent from my iPhone
On Oct 25, 2019, at 11:45 AM,
You are probably causing your command to run in the background with “&”. Try
using “and” instead.
Peter
Sent from my iPhone
> On Oct 25, 2019, at 11:45 AM, SHAHEE ISLAM wrote:
>
> Hi,
> I am trying to calculate the angle between P and N vector of my lipid
> (popc+popg) with regards to
Hi,
I am trying to calculate the angle between P and N vector of my lipid
(popc+popg) with regards to the z axis to see how the protein is affecting
the membrane. I am using this command, but it does not working
gmx select -f *.xtc -s *.tpr -select POPG & name P* N* within 1.0 of
Protein -oi
