There's nothing to add to a perfect answer! Indeed 'p' is for 'polarizable'
and should be used with a polarizable water model (PW) and not with the
normal model (W). Also, Martini is not Gromacs, so information about the
force field should not be expected in the Gromacs manual, but can be found
in
Dear Ming,
There is nothing to fix. The first note is a simple reminder that
cutoff-scheme is deprecated. The second warning is what it is, a warning.
The [ atomtypes ] in the martini ff do not specify the radii. However there
are [ nonbond_params ] for the W atomtype, i.e. P4. The radius is
Dear all,
I am learning martini method in gromacs through the tutorial
http://md.chem.rug.nl/cgmartini/index.php/proteins.http://md.chem.rug.nl/cgmartini/index.php/proteins
when solvating the system, I came across the following note:
NOTE: This file uses the deprecated 'group' cutoff_scheme.
