Re: [gmx-users] mdrun stopped without error

2018-08-05 Thread Mark Abraham
Hi, We also intend that this does not happen. But none of the developers use these features much, so we need help in the form of reproducible bug reports, please :-) Mark On Mon, Aug 6, 2018, 01:29 Alex wrote: > To be fair, Gromacs does die with absolutely nothing in all logs once in > a

Re: [gmx-users] mdrun stopped without error

2018-08-05 Thread Alex
To be fair, Gromacs does die with absolutely nothing in all logs once in a while, and it is not due to queue management, of which we have none. In my case, with a 100% probability, it happens when the setup is garbage, like your boundaries are crap, or you mixed up angstroms with nanometers in

Re: [gmx-users] mdrun stopped without error

2018-08-05 Thread Mark Abraham
Hi, Both the log file and the street output have the reason if GROMACS understands the reason. Most likely on the information you've given is that the queue/cluster killed the job. Mark On Sat, Aug 4, 2018, 08:31 Atila Petrosian wrote: > Hi all, > > I am doing md simulation. But mdrun stopped

Re: [gmx-users] mdrun stopped without error

2018-08-05 Thread RAHUL SURESH
Update your log file, that would help us know better about the reason behind it.! On Sat, 4 Aug 2018 at 12:01 PM, Atila Petrosian wrote: > Hi all, > > I am doing md simulation. But mdrun stopped without any error in log file. > > I repeated it. But mdrun stopped again in another step. > > What

[gmx-users] mdrun stopped without error

2018-08-04 Thread Atila Petrosian
Hi all, I am doing md simulation. But mdrun stopped without any error in log file. I repeated it. But mdrun stopped again in another step. What is the reason of stopping. Best, Atila -- Gromacs Users mailing list * Please search the archive at