On 12/30/14 1:48 AM, elham tazikeh wrote:
Dear Justin
i choosed *Cubic* box for amyloid beta peptide+Zn ion simulation
for this reason, my *volume* is defined
Sure, but box shape doesn't mean anything. Box volume is what is important. I
can make a cubic box with 1-nm edges and I can make
Dear GMX users
i d like to know about pdb information
for instance, when i defined concentration of an ion by genion (-conc),
gromacs added ion(s) to my structure
Now, my question is:
in a pdb e.g. (1ZE9: Amyloid beta peptide+Zn+2), there is only one cation
in pdb file
i want to know about its
On 12/29/14 11:08 AM, elham tazikeh wrote:
Dear GMX users
i d like to know about pdb information
for instance, when i defined concentration of an ion by genion (-conc),
gromacs added ion(s) to my structure
Now, my question is:
in a pdb e.g. (1ZE9: Amyloid beta peptide+Zn+2), there is only
Dear Justin
i choosed *Cubic* box for amyloid beta peptide+Zn ion simulation
for this reason, my *volume* is defined
if i suppose that, Zn ion = 1 mol
its concentration will be calculated
my assumption is correct?
cheers
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