Re: [gmx-users] reaction field and permittivity

2015-09-10 Thread Johnny Lu
thank you very much. On Thu, Sep 10, 2015 at 4:43 PM, Justin Lemkul wrote: > > > On 9/10/15 4:40 PM, Johnny Lu wrote: > >> Dear Users, >> >> I used mdp file at the following url for NVE vacuum simulation >> >>

[gmx-users] reaction field and permittivity

2015-09-10 Thread Johnny Lu
Dear Users, I used mdp file at the following url for NVE vacuum simulation http://shourjya.thinkbiosolution.com/wp-content/uploads/2013/02/nvevaccmdp1.txt Does epsilon_rf affect the simulation? epsilon_rf is dielectric constant beyond the cut-off. Since I set 0 for all the cut-off, the cut-off

Re: [gmx-users] reaction field and permittivity

2015-09-10 Thread Justin Lemkul
On 9/10/15 4:40 PM, Johnny Lu wrote: Dear Users, I used mdp file at the following url for NVE vacuum simulation http://shourjya.thinkbiosolution.com/wp-content/uploads/2013/02/nvevaccmdp1.txt Does epsilon_rf affect the simulation? epsilon_rf is dielectric constant beyond the cut-off. No.