Re: [gmx-users] with 5.0: file INSTALL cannot find gmx

2014-12-12 Thread Jochen Hub
Am 12/12/14 19:40, schrieb Johnny Lu: > Oh, and what version of cmake are you using? > > If that is too old, you can compile a newer version of cmake and then use > that. Hey, that was a good hint!! I used 2.8.12.2 before. I just gave it a try with the latest 3.02 - and it worked! So many thank

Re: [gmx-users] with 5.0: file INSTALL cannot find gmx

2014-12-12 Thread Johnny Lu
Oh, and what version of cmake are you using? If that is too old, you can compile a newer version of cmake and then use that. On Fri, Dec 12, 2014 at 1:35 PM, Johnny Lu wrote: > > maybe ... compile it on the head node of the cluster, and hope it has a > local storage? > > fftpack is slow, and let

Re: [gmx-users] with 5.0: file INSTALL cannot find gmx

2014-12-12 Thread Johnny Lu
maybe ... compile it on the head node of the cluster, and hope it has a local storage? fftpack is slow, and let gromacs build its own fftw3 library is better. I don't know if the fftpack code of gromacs is old. May be Location of where you run cmake/CMakeFiles/CMakeError.log will tell a bit mor

Re: [gmx-users] with 5.0: file INSTALL cannot find gmx

2014-12-12 Thread Jochen Hub
Am 12/12/14 19:07, schrieb Mark Abraham: > Hi, > > I have seen similar behaviour on "interesting" setups, e.g. where the same > physical file system has different logical locations, but I don't know > where the issue is. $(pwd) should be expanded by the shell before cmake > sees it, so how a wro

Re: [gmx-users] with 5.0: file INSTALL cannot find gmx

2014-12-12 Thread Jochen Hub
Am 12/12/14 19:07, schrieb Mark Abraham: > Hi, > > I have seen similar behaviour on "interesting" setups, e.g. where the same > physical file system has different logical locations, but I don't know > where the issue is. $(pwd) should be expanded by the shell before cmake > sees it, so how a wro

Re: [gmx-users] with 5.0: file INSTALL cannot find gmx

2014-12-12 Thread Mark Abraham
Hi, I have seen similar behaviour on "interesting" setups, e.g. where the same physical file system has different logical locations, but I don't know where the issue is. $(pwd) should be expanded by the shell before cmake sees it, so how a wrong path could get into cmake_install.cmake is a mystery

Re: [gmx-users] with 5.0: file INSTALL cannot find gmx

2014-12-12 Thread Johnny Lu
I'm not sure what happened, but so far when i install, i use full path instead of $(pwd) and it was fine for gromacs 4.6 and 5.0, 5.0.2. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read ht

[gmx-users] with 5.0: file INSTALL cannot find gmx

2014-12-12 Thread Jochen Hub
Hi all, I am having trouble to make install Gromacs 5.0x under Linux. make install fails with: CMake Error at src/programs/cmake_install.cmake:42 (FILE): file INSTALL cannot find "/home/waxs/opt/gmx/5.03-rotmax/bin/gmx". Call Stack (most recent call first): src/cmake_install.cmake:40 (INCLUDE